Databases

Autometa comes packaged with the necessary markers files and will download and format NCBI files during the first run.

NCBI

• non-redundant protein database (nr) - link

• taxdump.tar.gz - link

  • required files within taxdump tarball are nodes.dmp, names.dmp and merged.dmp

• prot.accession2taxid.gz - link

Markers

• bacteria single-copy-markers - link
• bacteria single-copy-markers cutoffs - link
• archaea single-copy-markers - link
• archaea single-copy-markers cutoffs - link