lca.py¶

usage: lca.py

Script to determine Lowest Common Ancestor

optional arguments:
  -h, --help       show this help message and exit
  --output OUTPUT  Path to write LCA results. (default: None)
  --blast BLAST    Path to BLAST results table respective to `orfs`. (Note:
                   The table provided must be in outfmt=6) (default: None)
  --dbdir DBDIR    Path to NCBI databases directory. (default: NCBI_DIR)
  --verbose        Add verbosity to logging stream. (default: False)
  --force          Force overwrite if results already exist. (default: False)